Cell Culture:Article Title: Muscle-fiber-inspired nanofibrillar microbundles induce myogenic differentiation in human adipose-derived stem cells
Article Snippet: .. HSkMCs (ATCC, Manassas, VA, USA) were cultured according to the manufacturer's recommendations in ATCC Mesenchymal Stem Cell Basal Medium (PCS-500-030, ATCC) supplemented with the Primary Skeletal Muscle Growth Kit (PCS-950-040, ATCC) and 1% penicillin–streptomycin (P/S), under standard culture conditions (37 °C, 5% CO 2 ). .. In parallel, hASCs (Lonza, Basel, Switzerland) were cultured in DMEM/F-12 (Gibco, Thermo Fisher Scientific, Waltham, MA, USA) supplemented with 10% fetal calf serum (FCS) and 1% P/S under the same conditions.
Article Title: Muscle-fiber-inspired nanofibrillar microbundles induce myogenic differentiation in human adipose-derived stem cells
Article Snippet: .. HSkMCs (ATCC, Manassas, VA, USA) were cultured according to the manufacturer's recommendations in ATCC Mesenchymal Stem Cell Basal Medium (PCS-500-030, ATCC) supplemented with the Primary Skeletal Muscle Growth Kit (PCS-950-040, ATCC) and 1% penicillin–streptomycin (P/S), under standard culture conditions (37 ◦C, 5% CO2). .. In parallel, hASCs (Lonza, Basel, Switzerland) were cultured in DMEM/F-12 (Gibco, Thermo Fisher Scientific, Waltham, MA, USA) supplemented with 10% fetal calf serum (FCS) and 1% P/S under the same conditions.
Modification:Article Title: An explainable deep learning platform for molecular discovery
Article Snippet: HepG2 cells (ATCC Cat# HB-8065, RRID:CVCL_0027, https://scicrunch.org/resolver/RRID:CVCL_0027 ) Human primary skeletal muscle cells (HSkMCs; ATCC Cat# PCS-950–010) IMR-90 cells (ATCC Cat# CCL-186, RRID:CVCL_0347, https://scicrunch.org/resolver/RRID:CVCL_0347 ) CAUTION: The cell lines used should be regularly checked to ensure they are authentic and are not infected with mycoplasma. .. Liquid LB medium (Becton Dickinson 244620) LB media containing 1.5% (wt/vol) Difco agar (Becton Dickinson 244520) Dulbecco’s Modified Eagle Medium (DMEM; Corning 10–013-CV) Fetal bovine serum (FBS; ThermoFisher 16140071) Penicillin-streptomycin (PS; ThermoFisher 15070063) Mesenchymal stem cell basal medium for adipose, umbilical and bone marrow-derived MSCs (ATCC PCS-500–030) Primary skeletal muscle growth kit (ATCC PCS-950–040) Eagle’s Minimum Essential Medium (EMEM; ATCC 30–2003) Trypsin-EDTA, 0.05% (wt/vol) (Corning) Resazurin (MilliporeSigma R7017) Pharmakon Collection (MicroSource Discovery Systems) Natural Products Collection (MicroSource Discovery Systems) Optional: dimethyl sulfoxide (DMSO; MilliporeSigma D5879) Sterile pipette tips (Rainin) Optional: liquid-handling robot (e.g., Agilent Bravo or similar) Sterile microbiological inoculation loops (Beckton Dickinson) Sterile 14 mL culture tubes (Falcon) Sterile 15 mL centrifuge tubes (Falcon) Sterile untreated clear flat-bottom 96-well plates (Corning) Sterile tissue-treated black flat-bottom 96-well plates (Corning) Sterile untreated petri dishes, 100 mm × 15 mm (Falcon) Sterile tissue culture flasks, T-175 (Falcon) Sterile reagent reservoirs (Corning) Sterile filter, 0.45 μm (Corning) Microbiological humidity-controlled incubator set to 37°C and 0% CO 2 (vol/vol), with shaking option (ThermoFisher) Tissue culture humidity-controlled incubator set to 37°C and 5% CO 2 (vol/vol) (ThermoFisher) Inverted tissue culture microscope with a low-magnification (e.g., 4×) objective (Leica) Plate reader capable of reading absorbance and fluorescence (e.g., SpectraMax M3 plate reader or similar) Centrifuge with rotors for Falcon tubes and plates Optional: Liquid dispenser with sterile cassette (e.g., Agilent BioTeK MultiFlo dispenser or similar) Internet connection is required to download the software in Equipment setup . ..
Article Title: An explainable deep learning platform for molecular discovery
Article Snippet: .. Liquid LB medium (Becton Dickinson 244620) LB media containing 1.5% (wt/vol) Difco agar (Becton Dickinson 244520) Dulbecco’s Modified Eagle Medium (DMEM; Corning 10–013-CV) Fetal bovine serum (FBS; ThermoFisher 16140071) Penicillin-streptomycin (PS; ThermoFisher 15070063) Mesenchymal stem cell basal medium for adipose, umbilical and bone marrow-derived MSCs (ATCC PCS-500–030) Primary skeletal muscle growth kit (ATCC PCS-950–040) Eagle’s Minimum Essential Medium (EMEM; ATCC 30–2003) Trypsin-EDTA, 0.05% (wt/vol) (Corning) Resazurin (MilliporeSigma R7017) Pharmakon Collection (MicroSource Discovery Systems) Natural Products Collection (MicroSource Discovery Systems) Optional: dimethyl sulfoxide (DMSO; MilliporeSigma D5879) .. Sterile pipette tips (Rainin) Optional: liquid-handling robot (e.g., Agilent Bravo or similar) Sterile microbiological inoculation loops (Beckton Dickinson) Sterile 14 mL culture tubes (Falcon) Sterile 15 mL centrifuge tubes (Falcon) Sterile untreated clear flat-bottom 96-well plates (Corning) Sterile tissue-treated black flat-bottom 96-well plates (Corning) Sterile untreated petri dishes, 100 mm × 15 mm (Falcon) Sterile tissue culture flasks, T-175 (Falcon) Sterile reagent reservoirs (Corning) Sterile filter, 0.45 μm (Corning) Microbiological humidity-controlled incubator set to 37°C and 0% CO 2 (vol/vol), with shaking option (ThermoFisher) Tissue culture humidity-controlled incubator set to 37°C and 5% CO 2 (vol/vol) (ThermoFisher) Inverted tissue culture microscope with a low-magnification (e.g., 4×) objective (Leica) Plate reader capable of reading absorbance and fluorescence (e.g., SpectraMax M3 plate reader or similar) Centrifuge with rotors for Falcon tubes and plates Optional: Liquid dispenser with sterile cassette (e.g., Agilent BioTeK MultiFlo dispenser or similar) Internet connection is required to download the software in Equipment setup .
Sterility:Article Title: An explainable deep learning platform for molecular discovery
Article Snippet: HepG2 cells (ATCC Cat# HB-8065, RRID:CVCL_0027, https://scicrunch.org/resolver/RRID:CVCL_0027 ) Human primary skeletal muscle cells (HSkMCs; ATCC Cat# PCS-950–010) IMR-90 cells (ATCC Cat# CCL-186, RRID:CVCL_0347, https://scicrunch.org/resolver/RRID:CVCL_0347 ) CAUTION: The cell lines used should be regularly checked to ensure they are authentic and are not infected with mycoplasma. .. Liquid LB medium (Becton Dickinson 244620) LB media containing 1.5% (wt/vol) Difco agar (Becton Dickinson 244520) Dulbecco’s Modified Eagle Medium (DMEM; Corning 10–013-CV) Fetal bovine serum (FBS; ThermoFisher 16140071) Penicillin-streptomycin (PS; ThermoFisher 15070063) Mesenchymal stem cell basal medium for adipose, umbilical and bone marrow-derived MSCs (ATCC PCS-500–030) Primary skeletal muscle growth kit (ATCC PCS-950–040) Eagle’s Minimum Essential Medium (EMEM; ATCC 30–2003) Trypsin-EDTA, 0.05% (wt/vol) (Corning) Resazurin (MilliporeSigma R7017) Pharmakon Collection (MicroSource Discovery Systems) Natural Products Collection (MicroSource Discovery Systems) Optional: dimethyl sulfoxide (DMSO; MilliporeSigma D5879) Sterile pipette tips (Rainin) Optional: liquid-handling robot (e.g., Agilent Bravo or similar) Sterile microbiological inoculation loops (Beckton Dickinson) Sterile 14 mL culture tubes (Falcon) Sterile 15 mL centrifuge tubes (Falcon) Sterile untreated clear flat-bottom 96-well plates (Corning) Sterile tissue-treated black flat-bottom 96-well plates (Corning) Sterile untreated petri dishes, 100 mm × 15 mm (Falcon) Sterile tissue culture flasks, T-175 (Falcon) Sterile reagent reservoirs (Corning) Sterile filter, 0.45 μm (Corning) Microbiological humidity-controlled incubator set to 37°C and 0% CO 2 (vol/vol), with shaking option (ThermoFisher) Tissue culture humidity-controlled incubator set to 37°C and 5% CO 2 (vol/vol) (ThermoFisher) Inverted tissue culture microscope with a low-magnification (e.g., 4×) objective (Leica) Plate reader capable of reading absorbance and fluorescence (e.g., SpectraMax M3 plate reader or similar) Centrifuge with rotors for Falcon tubes and plates Optional: Liquid dispenser with sterile cassette (e.g., Agilent BioTeK MultiFlo dispenser or similar) Internet connection is required to download the software in Equipment setup . ..
Transferring:Article Title: An explainable deep learning platform for molecular discovery
Article Snippet: HepG2 cells (ATCC Cat# HB-8065, RRID:CVCL_0027, https://scicrunch.org/resolver/RRID:CVCL_0027 ) Human primary skeletal muscle cells (HSkMCs; ATCC Cat# PCS-950–010) IMR-90 cells (ATCC Cat# CCL-186, RRID:CVCL_0347, https://scicrunch.org/resolver/RRID:CVCL_0347 ) CAUTION: The cell lines used should be regularly checked to ensure they are authentic and are not infected with mycoplasma. .. Liquid LB medium (Becton Dickinson 244620) LB media containing 1.5% (wt/vol) Difco agar (Becton Dickinson 244520) Dulbecco’s Modified Eagle Medium (DMEM; Corning 10–013-CV) Fetal bovine serum (FBS; ThermoFisher 16140071) Penicillin-streptomycin (PS; ThermoFisher 15070063) Mesenchymal stem cell basal medium for adipose, umbilical and bone marrow-derived MSCs (ATCC PCS-500–030) Primary skeletal muscle growth kit (ATCC PCS-950–040) Eagle’s Minimum Essential Medium (EMEM; ATCC 30–2003) Trypsin-EDTA, 0.05% (wt/vol) (Corning) Resazurin (MilliporeSigma R7017) Pharmakon Collection (MicroSource Discovery Systems) Natural Products Collection (MicroSource Discovery Systems) Optional: dimethyl sulfoxide (DMSO; MilliporeSigma D5879) Sterile pipette tips (Rainin) Optional: liquid-handling robot (e.g., Agilent Bravo or similar) Sterile microbiological inoculation loops (Beckton Dickinson) Sterile 14 mL culture tubes (Falcon) Sterile 15 mL centrifuge tubes (Falcon) Sterile untreated clear flat-bottom 96-well plates (Corning) Sterile tissue-treated black flat-bottom 96-well plates (Corning) Sterile untreated petri dishes, 100 mm × 15 mm (Falcon) Sterile tissue culture flasks, T-175 (Falcon) Sterile reagent reservoirs (Corning) Sterile filter, 0.45 μm (Corning) Microbiological humidity-controlled incubator set to 37°C and 0% CO 2 (vol/vol), with shaking option (ThermoFisher) Tissue culture humidity-controlled incubator set to 37°C and 5% CO 2 (vol/vol) (ThermoFisher) Inverted tissue culture microscope with a low-magnification (e.g., 4×) objective (Leica) Plate reader capable of reading absorbance and fluorescence (e.g., SpectraMax M3 plate reader or similar) Centrifuge with rotors for Falcon tubes and plates Optional: Liquid dispenser with sterile cassette (e.g., Agilent BioTeK MultiFlo dispenser or similar) Internet connection is required to download the software in Equipment setup . ..
Microscopy:Article Title: An explainable deep learning platform for molecular discovery
Article Snippet: HepG2 cells (ATCC Cat# HB-8065, RRID:CVCL_0027, https://scicrunch.org/resolver/RRID:CVCL_0027 ) Human primary skeletal muscle cells (HSkMCs; ATCC Cat# PCS-950–010) IMR-90 cells (ATCC Cat# CCL-186, RRID:CVCL_0347, https://scicrunch.org/resolver/RRID:CVCL_0347 ) CAUTION: The cell lines used should be regularly checked to ensure they are authentic and are not infected with mycoplasma. .. Liquid LB medium (Becton Dickinson 244620) LB media containing 1.5% (wt/vol) Difco agar (Becton Dickinson 244520) Dulbecco’s Modified Eagle Medium (DMEM; Corning 10–013-CV) Fetal bovine serum (FBS; ThermoFisher 16140071) Penicillin-streptomycin (PS; ThermoFisher 15070063) Mesenchymal stem cell basal medium for adipose, umbilical and bone marrow-derived MSCs (ATCC PCS-500–030) Primary skeletal muscle growth kit (ATCC PCS-950–040) Eagle’s Minimum Essential Medium (EMEM; ATCC 30–2003) Trypsin-EDTA, 0.05% (wt/vol) (Corning) Resazurin (MilliporeSigma R7017) Pharmakon Collection (MicroSource Discovery Systems) Natural Products Collection (MicroSource Discovery Systems) Optional: dimethyl sulfoxide (DMSO; MilliporeSigma D5879) Sterile pipette tips (Rainin) Optional: liquid-handling robot (e.g., Agilent Bravo or similar) Sterile microbiological inoculation loops (Beckton Dickinson) Sterile 14 mL culture tubes (Falcon) Sterile 15 mL centrifuge tubes (Falcon) Sterile untreated clear flat-bottom 96-well plates (Corning) Sterile tissue-treated black flat-bottom 96-well plates (Corning) Sterile untreated petri dishes, 100 mm × 15 mm (Falcon) Sterile tissue culture flasks, T-175 (Falcon) Sterile reagent reservoirs (Corning) Sterile filter, 0.45 μm (Corning) Microbiological humidity-controlled incubator set to 37°C and 0% CO 2 (vol/vol), with shaking option (ThermoFisher) Tissue culture humidity-controlled incubator set to 37°C and 5% CO 2 (vol/vol) (ThermoFisher) Inverted tissue culture microscope with a low-magnification (e.g., 4×) objective (Leica) Plate reader capable of reading absorbance and fluorescence (e.g., SpectraMax M3 plate reader or similar) Centrifuge with rotors for Falcon tubes and plates Optional: Liquid dispenser with sterile cassette (e.g., Agilent BioTeK MultiFlo dispenser or similar) Internet connection is required to download the software in Equipment setup . ..
Fluorescence:Article Title: An explainable deep learning platform for molecular discovery
Article Snippet: HepG2 cells (ATCC Cat# HB-8065, RRID:CVCL_0027, https://scicrunch.org/resolver/RRID:CVCL_0027 ) Human primary skeletal muscle cells (HSkMCs; ATCC Cat# PCS-950–010) IMR-90 cells (ATCC Cat# CCL-186, RRID:CVCL_0347, https://scicrunch.org/resolver/RRID:CVCL_0347 ) CAUTION: The cell lines used should be regularly checked to ensure they are authentic and are not infected with mycoplasma. .. Liquid LB medium (Becton Dickinson 244620) LB media containing 1.5% (wt/vol) Difco agar (Becton Dickinson 244520) Dulbecco’s Modified Eagle Medium (DMEM; Corning 10–013-CV) Fetal bovine serum (FBS; ThermoFisher 16140071) Penicillin-streptomycin (PS; ThermoFisher 15070063) Mesenchymal stem cell basal medium for adipose, umbilical and bone marrow-derived MSCs (ATCC PCS-500–030) Primary skeletal muscle growth kit (ATCC PCS-950–040) Eagle’s Minimum Essential Medium (EMEM; ATCC 30–2003) Trypsin-EDTA, 0.05% (wt/vol) (Corning) Resazurin (MilliporeSigma R7017) Pharmakon Collection (MicroSource Discovery Systems) Natural Products Collection (MicroSource Discovery Systems) Optional: dimethyl sulfoxide (DMSO; MilliporeSigma D5879) Sterile pipette tips (Rainin) Optional: liquid-handling robot (e.g., Agilent Bravo or similar) Sterile microbiological inoculation loops (Beckton Dickinson) Sterile 14 mL culture tubes (Falcon) Sterile 15 mL centrifuge tubes (Falcon) Sterile untreated clear flat-bottom 96-well plates (Corning) Sterile tissue-treated black flat-bottom 96-well plates (Corning) Sterile untreated petri dishes, 100 mm × 15 mm (Falcon) Sterile tissue culture flasks, T-175 (Falcon) Sterile reagent reservoirs (Corning) Sterile filter, 0.45 μm (Corning) Microbiological humidity-controlled incubator set to 37°C and 0% CO 2 (vol/vol), with shaking option (ThermoFisher) Tissue culture humidity-controlled incubator set to 37°C and 5% CO 2 (vol/vol) (ThermoFisher) Inverted tissue culture microscope with a low-magnification (e.g., 4×) objective (Leica) Plate reader capable of reading absorbance and fluorescence (e.g., SpectraMax M3 plate reader or similar) Centrifuge with rotors for Falcon tubes and plates Optional: Liquid dispenser with sterile cassette (e.g., Agilent BioTeK MultiFlo dispenser or similar) Internet connection is required to download the software in Equipment setup . ..
Software:Article Title: An explainable deep learning platform for molecular discovery
Article Snippet: HepG2 cells (ATCC Cat# HB-8065, RRID:CVCL_0027, https://scicrunch.org/resolver/RRID:CVCL_0027 ) Human primary skeletal muscle cells (HSkMCs; ATCC Cat# PCS-950–010) IMR-90 cells (ATCC Cat# CCL-186, RRID:CVCL_0347, https://scicrunch.org/resolver/RRID:CVCL_0347 ) CAUTION: The cell lines used should be regularly checked to ensure they are authentic and are not infected with mycoplasma. .. Liquid LB medium (Becton Dickinson 244620) LB media containing 1.5% (wt/vol) Difco agar (Becton Dickinson 244520) Dulbecco’s Modified Eagle Medium (DMEM; Corning 10–013-CV) Fetal bovine serum (FBS; ThermoFisher 16140071) Penicillin-streptomycin (PS; ThermoFisher 15070063) Mesenchymal stem cell basal medium for adipose, umbilical and bone marrow-derived MSCs (ATCC PCS-500–030) Primary skeletal muscle growth kit (ATCC PCS-950–040) Eagle’s Minimum Essential Medium (EMEM; ATCC 30–2003) Trypsin-EDTA, 0.05% (wt/vol) (Corning) Resazurin (MilliporeSigma R7017) Pharmakon Collection (MicroSource Discovery Systems) Natural Products Collection (MicroSource Discovery Systems) Optional: dimethyl sulfoxide (DMSO; MilliporeSigma D5879) Sterile pipette tips (Rainin) Optional: liquid-handling robot (e.g., Agilent Bravo or similar) Sterile microbiological inoculation loops (Beckton Dickinson) Sterile 14 mL culture tubes (Falcon) Sterile 15 mL centrifuge tubes (Falcon) Sterile untreated clear flat-bottom 96-well plates (Corning) Sterile tissue-treated black flat-bottom 96-well plates (Corning) Sterile untreated petri dishes, 100 mm × 15 mm (Falcon) Sterile tissue culture flasks, T-175 (Falcon) Sterile reagent reservoirs (Corning) Sterile filter, 0.45 μm (Corning) Microbiological humidity-controlled incubator set to 37°C and 0% CO 2 (vol/vol), with shaking option (ThermoFisher) Tissue culture humidity-controlled incubator set to 37°C and 5% CO 2 (vol/vol) (ThermoFisher) Inverted tissue culture microscope with a low-magnification (e.g., 4×) objective (Leica) Plate reader capable of reading absorbance and fluorescence (e.g., SpectraMax M3 plate reader or similar) Centrifuge with rotors for Falcon tubes and plates Optional: Liquid dispenser with sterile cassette (e.g., Agilent BioTeK MultiFlo dispenser or similar) Internet connection is required to download the software in Equipment setup . ..
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